Fishgrs Install -

Ubuntu/Debian

You can install fish on Ubuntu or Debian-based systems using the following command:

sudo apt-get update
sudo apt-get install fish

The Installation Process

The installation method for Fish depends entirely on your operating system. The developers have made it widely available across all major platforms. fishgrs install

For Linux Users On Linux, installation is typically handled via your distribution’s native package manager. Ubuntu/Debian You can install fish on Ubuntu or

• Debian/Ubuntu: You can install it via apt. However, to get the absolute latest version (highly recommended), you should add the official Fish repository:

  sudo apt-add-repository ppa:fish-shell/release-3
  sudo apt update
  sudo apt install fish
  

• Fedora: Use dnf install fish.
• Arch Linux: Use pacman -S fish.

For macOS Users macOS users have two primary options. If you use the Homebrew package manager (which most developers do), the process is incredibly simple: The Installation Process The installation method for Fish

brew install fish

Alternatively, MacPorts can be used (port install fish).

For Windows Users Installing a Unix-style shell on Windows has become much easier with the Windows Subsystem for Linux (WSL). If you have WSL installed (specifically WSL2 with a distribution like Ubuntu), you simply follow the Linux instructions above inside your WSL terminal. If you are using Cygwin or MSYS2, Fish is available in their respective package repositories.

Example Usage

# Process sample data
fishgrs process --input data/sample.fastq --output results/
Behind the Scenes
| Step | Action |
|------|--------|
| 1️⃣ | Resolves package name to source (registry/git) |
| 2️⃣ | Clones/downloads into ~/.local/share/fishgrs/ |
| 3️⃣ | Adds to fishfile (dependency lock) |
| 4️⃣ | Symlinks or sources plugin files |
| 5️⃣ | Runs post-install hooks (if any) |

How to Update to the Latest Version
conda activate fishgrs_env
conda update fishgrs -c bioconda